IL_6R6G_086
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6R6G|1|5|U|1698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_086 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1694
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6R6G|1|5|C|1695
6R6G|1|5|C|1696
6R6G|1|5|U|1697
6R6G|1|5|U|1698
6R6G|1|5|G|1699
6R6G|1|5|A|1700
6R6G|1|5|A|1701
6R6G|1|5|G|1702
*
6R6G|1|5|U|1722
6R6G|1|5|G|1723
6R6G|1|5|G|1724
6R6G|1|5|A|1725
6R6G|1|5|G|1726
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain Y
- Ribosomal protein L26
- Chain e
- eL32
Coloring options: