IL_6R6G_104

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6R6G|1|5|G|2537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_104 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.2052

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6R6G|1|5|A|2243
6R6G|1|5|G|2244
6R6G|1|5|U|2245
6R6G|1|5|C|2246
6R6G|1|5|G|2247
6R6G|1|5|G|2248
*
6R6G|1|5|C|2535
6R6G|1|5|U|2536
6R6G|1|5|G|2537
6R6G|1|5|U|2538

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

eL14