IL_6R6G_105

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6R6G|1|5|U|2273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_105 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1326

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6R6G|1|5|C|2260
6R6G|1|5|G|2261
6R6G|1|5|U|2262
6R6G|1|5|A|2263
6R6G|1|5|A|2264
6R6G|1|5|C|2265
*
6R6G|1|5|G|2270
6R6G|1|5|G|2271
6R6G|1|5|A|2272
6R6G|1|5|U|2273
6R6G|1|5|A|2274
6R6G|1|5|A|2275
6R6G|1|5|G|2276

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41

Chain p

ribosomal protein eL43