IL_6R6G_114

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_114 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1891

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6R6G|1|5|U|2413
6R6G|1|5|C|2414
6R6G|1|5|A|2415
6R6G|1|5|A|2416
6R6G|1|5|A|2417
6R6G|1|5|G|2418
6R6G|1|5|U|2419
*
6R6G|1|5|A|2430
6R6G|1|5|A|2431
6R6G|1|5|U|2432
6R6G|1|5|G|2433
6R6G|1|5|A|2434
6R6G|1|5|A|2435
6R6G|1|5|G|2436

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain i

60S ribosomal protein L36

Chain o

eL42