IL_6R6G_114
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_114 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1891
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|5|U|2413
6R6G|1|5|C|2414
6R6G|1|5|A|2415
6R6G|1|5|A|2416
6R6G|1|5|A|2417
6R6G|1|5|G|2418
6R6G|1|5|U|2419
*
6R6G|1|5|A|2430
6R6G|1|5|A|2431
6R6G|1|5|U|2432
6R6G|1|5|G|2433
6R6G|1|5|A|2434
6R6G|1|5|A|2435
6R6G|1|5|G|2436
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain i
- 60S ribosomal protein L36
- Chain o
- eL42
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