3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UCAAAGU*AAUGAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_114 not in the Motif Atlas
Homologous match to IL_8C3A_093
Geometric discrepancy: 0.1891
The information below is about IL_8C3A_093
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36973.8
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6R6G|1|5|U|2413
6R6G|1|5|C|2414
6R6G|1|5|A|2415
6R6G|1|5|A|2416
6R6G|1|5|A|2417
6R6G|1|5|G|2418
6R6G|1|5|U|2419
*
6R6G|1|5|A|2430
6R6G|1|5|A|2431
6R6G|1|5|U|2432
6R6G|1|5|G|2433
6R6G|1|5|A|2434
6R6G|1|5|A|2435
6R6G|1|5|G|2436

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain A
uL2
Chain i
60S ribosomal protein L36
Chain o
eL42

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