IL_6R6G_116

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6R6G|1|5|A|2483, 6R6G|1|5|C|2489, 6R6G|1|5|C|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_116 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1647

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6R6G|1|5|C|2479
6R6G|1|5|C|2480
6R6G|1|5|A|2481
6R6G|1|5|A|2482
6R6G|1|5|A|2483
6R6G|1|5|U|2484
6R6G|1|5|G|2485
6R6G|1|5|C|2486
6R6G|1|5|C|2487
6R6G|1|5|U|2488
6R6G|1|5|C|2489
6R6G|1|5|G|2490
*
6R6G|1|5|C|2506
6R6G|1|5|G|2507
6R6G|1|5|C|2508
6R6G|1|5|G|2509

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41