IL_6R6G_128

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

6R6G|1|5|C|2919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_128 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2663

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6R6G|1|5|G|2917
6R6G|1|5|A|2918
6R6G|1|5|C|2919
6R6G|1|5|C|2920
*
6R6G|1|5|G|2934
6R6G|1|5|C|2935

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain Q

eL18

Chain a

uL15

Chain o

eL42