IL_6R6G_147

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6R6G|1|5|U|3204, 6R6G|1|5|U|3206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_147 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2715

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6R6G|1|5|U|3202
6R6G|1|5|G|3203
6R6G|1|5|U|3204
6R6G|1|5|A|3205
6R6G|1|5|U|3206
6R6G|1|5|G|3207
*
6R6G|1|5|C|3232
6R6G|1|5|G|3233
6R6G|1|5|A|3234
6R6G|1|5|A|3235
6R6G|1|5|G|3236

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

Ribosomal protein L24

Chain d

eL31