IL_6R6G_150

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6R6G|1|5|A|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_150 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2286

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6R6G|1|5|G|3250
6R6G|1|5|A|3251
6R6G|1|5|U|3252
6R6G|1|5|U|3253
6R6G|1|5|A|3254
6R6G|1|5|U|3255
*
6R6G|1|5|A|3275
6R6G|1|5|G|3276
6R6G|1|5|A|3277
6R6G|1|5|A|3278
6R6G|1|5|U|3279
6R6G|1|5|C|3280

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

60S ribosomal protein L13a

Chain m

60S ribosomal protein L40