IL_6R6G_153
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUCCC*GGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_153 not in the Motif Atlas
- Geometric match to IL_2O3Y_003
- Geometric discrepancy: 0.385
- The information below is about IL_2O3Y_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6R6G|1|5|G|3332
6R6G|1|5|U|3333
6R6G|1|5|C|3334
6R6G|1|5|C|3335
6R6G|1|5|C|3336
*
6R6G|1|5|G|3344
6R6G|1|5|G|3345
6R6G|1|5|U|3346
6R6G|1|5|C|3347
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- uL6
- Chain O
- 60S ribosomal protein L13a
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