IL_6R6G_177

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_177 not in the Motif Atlas

Homologous match to IL_1MFQ_004

Geometric discrepancy: 0.1368

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6R6G|1|AF|G|138
6R6G|1|AF|A|139
6R6G|1|AF|C|140
6R6G|1|AF|C|141
*
6R6G|1|AF|G|156
6R6G|1|AF|A|157
6R6G|1|AF|C|158
6R6G|1|AF|C|159

Current chains

Chain AF

7S RNA

Nearby chains

Chain AC

Signal recognition particle subunit SRP19