IL_6R6G_178

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6R6G|1|AF|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_178 not in the Motif Atlas

Geometric match to IL_4P3U_011

Geometric discrepancy: 0.324

The information below is about IL_4P3U_011

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6R6G|1|AF|G|175
6R6G|1|AF|A|176
6R6G|1|AF|G|177
*
6R6G|1|AF|C|220
6R6G|1|AF|C|221

Current chains

Chain AF

7S RNA

Nearby chains

Chain AI

Signal recognition particle subunit SRP68