IL_6R6G_180

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_180 not in the Motif Atlas

Homologous match to IL_1MFQ_007

Geometric discrepancy: 0.1924

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6R6G|1|AF|C|190
6R6G|1|AF|C|191
6R6G|1|AF|A|192
6R6G|1|AF|G|193
6R6G|1|AF|G|194
6R6G|1|AF|U|195
*
6R6G|1|AF|G|204
6R6G|1|AF|A|205
6R6G|1|AF|G|206
6R6G|1|AF|C|207
6R6G|1|AF|A|208
6R6G|1|AF|G|209

Current chains

Chain AF

7S RNA

Nearby chains

Chain AB

Signal recognition particle 54 kDa protein

Chain AC

Signal recognition particle subunit SRP19