3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UACGCA*UGAAA
Length
11 nucleotides
Bulged bases
6R6G|1|K|C|65, 6R6G|1|K|C|67
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_187 not in the Motif Atlas
Homologous match to IL_4V88_390
Geometric discrepancy: 0.2279
The information below is about IL_4V88_390
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_87517.1
Basepair signature
cWW-L-R-L-R-tHS-L-cWW
Number of instances in this motif group
2

Unit IDs

6R6G|1|K|U|63
6R6G|1|K|A|64
6R6G|1|K|C|65
6R6G|1|K|G|66
6R6G|1|K|C|67
6R6G|1|K|A|68
*
6R6G|1|K|U|81
6R6G|1|K|G|82
6R6G|1|K|A|83
6R6G|1|K|A|84
6R6G|1|K|A|85

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain NN
40S ribosomal protein S24
Chain W
Ribosomal protein L24
Chain z
40S ribosomal protein S6

Coloring options:


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