IL_6R6G_202

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6R6G|1|K|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_202 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.2125

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6R6G|1|K|G|411
6R6G|1|K|G|412
6R6G|1|K|G|413
*
6R6G|1|K|C|424
6R6G|1|K|G|425
6R6G|1|K|A|426
6R6G|1|K|U|427
6R6G|1|K|U|428
6R6G|1|K|C|429

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain VV

Ribosomal protein S23

Chain x

40S ribosomal protein S4