IL_6R6G_235

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_235 not in the Motif Atlas

Homologous match to IL_4V88_438

Geometric discrepancy: 0.2005

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6R6G|1|K|C|1098
6R6G|1|K|G|1099
6R6G|1|K|A|1100
6R6G|1|K|U|1101
*
6R6G|1|K|G|1131
6R6G|1|K|C|1132
6R6G|1|K|A|1133
6R6G|1|K|G|1134

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain KK

eS17

Chain LL

40S ribosomal protein S26

Chain QQ

ribosomal protein uS15

Chain q

uS2

Chain u

40S ribosomal protein S3a