IL_6R6G_238

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_238 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1085

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6R6G|1|K|G|1168
6R6G|1|K|G|1169
6R6G|1|K|A|1170
6R6G|1|K|G|1171
6R6G|1|K|U|1172
6R6G|1|K|A|1173
6R6G|1|K|U|1174
6R6G|1|K|G|1175
*
6R6G|1|K|U|1186
6R6G|1|K|G|1187
6R6G|1|K|A|1188
6R6G|1|K|A|1189
6R6G|1|K|A|1190
6R6G|1|K|C|1191

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain VV

Ribosomal protein S23

Chain n

60s ribosomal protein l41