IL_6R6G_247

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_247 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3307

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

6R6G|1|K|A|1291
6R6G|1|K|C|1292
6R6G|1|K|A|1293
6R6G|1|K|G|1294
*
6R6G|1|K|C|1305
6R6G|1|K|U|1306
6R6G|1|K|U|1307
6R6G|1|K|U|1308

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 0

eS31

Chain 9

uS14

Chain WW

uS19