IL_6R6G_255

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6R6G|1|K|C|1403, 6R6G|1|K|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_255 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2567

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6R6G|1|K|A|1402
6R6G|1|K|C|1403
6R6G|1|K|U|1404
6R6G|1|K|A|1405
*
6R6G|1|K|U|1441
6R6G|1|K|U|1442
6R6G|1|K|C|1443
6R6G|1|K|U|1444

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 6

ribosomal protein RACK1

Chain GG

Ribosomal protein S20

Chain UU

Ribosomal protein S16