IL_6R6G_267

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

6R6G|1|K|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_267 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.3147

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6R6G|1|K|U|1720
6R6G|1|K|U|1721
6R6G|1|K|G|1722
*
6R6G|1|K|U|1812
6R6G|1|K|A|1813

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain V

eL14

Chain VV

Ribosomal protein S23

Chain n

60s ribosomal protein l41