IL_6R6G_278
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 6R6G|1|5|G|625, 6R6G|1|5|U|648, 6R6G|1|5|C|650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_278 not in the Motif Atlas
- Geometric match to IL_8C3A_022
- Geometric discrepancy: 0.2666
- The information below is about IL_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|G|622
6R6G|1|5|A|623
6R6G|1|5|A|624
6R6G|1|5|G|625
6R6G|1|5|G|626
6R6G|1|5|U|627
6R6G|1|5|G|628
6R6G|1|5|G|629
*
6R6G|1|5|U|645
6R6G|1|5|G|646
6R6G|1|5|U|647
6R6G|1|5|U|648
6R6G|1|5|A|649
6R6G|1|5|C|650
6R6G|1|5|A|651
6R6G|1|5|G|652
6R6G|1|5|C|653
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain M
- Ribosomal protein L14
- Chain S
- eL20
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