3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGGCC*GAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_298 not in the Motif Atlas
Geometric match to IL_4LFB_065
Geometric discrepancy: 0.3209
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6R6G|1|K|C|927
6R6G|1|K|G|928
6R6G|1|K|G|929
6R6G|1|K|C|930
6R6G|1|K|C|931
*
6R6G|1|K|G|1010
6R6G|1|K|A|1011
6R6G|1|K|A|1012
6R6G|1|K|U|1013
6R6G|1|K|G|1014

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain JJ
40S ribosomal protein S27
Chain QQ
ribosomal protein uS15
Chain c
eL30
Chain u
40S ribosomal protein S3a

Coloring options:


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