IL_6R6G_307

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

6R6G|1|5|C|3320, 6R6G|1|5|U|3321, 6R6G|1|5|A|3327, 6R6G|1|5|G|3352, 6R6G|1|5|C|3353, 6R6G|1|5|G|3355, 6R6G|1|5|A|3358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_307 not in the Motif Atlas

Homologous match to IL_8P9A_352

Geometric discrepancy: 0.5529

The information below is about IL_8P9A_352

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42231.1

Basepair signature

cWW-L-R-L-cWW-L-cWW-cSS-L

Number of instances in this motif group

2

Unit IDs

6R6G|1|5|C|3319
6R6G|1|5|C|3320
6R6G|1|5|U|3321
6R6G|1|5|C|3322
6R6G|1|5|G|3323
6R6G|1|5|G|3324
6R6G|1|5|A|3325
6R6G|1|5|U|3326
6R6G|1|5|A|3327
6R6G|1|5|G|3328
6R6G|1|5|C|3329
*
6R6G|1|5|G|3350
6R6G|1|5|U|3351
6R6G|1|5|G|3352
6R6G|1|5|C|3353
6R6G|1|5|G|3354
6R6G|1|5|G|3355
6R6G|1|5|A|3356
6R6G|1|5|G|3357
6R6G|1|5|A|3358
6R6G|1|5|G|3359

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain H

uL6

Chain M

Ribosomal protein L14

Chain O

60S ribosomal protein L13a

Chain S

eL20