3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GACAGGAUUG*CUCGAUUC
Length
18 nucleotides
Bulged bases
6R6G|1|K|G|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_310 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.2906
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6R6G|1|K|G|1281
6R6G|1|K|A|1282
6R6G|1|K|C|1283
6R6G|1|K|A|1284
6R6G|1|K|G|1285
6R6G|1|K|G|1286
6R6G|1|K|A|1287
6R6G|1|K|U|1288
6R6G|1|K|U|1289
6R6G|1|K|G|1290
*
6R6G|1|K|C|1309
6R6G|1|K|U|1310
6R6G|1|K|C|1311
6R6G|1|K|G|1312
6R6G|1|K|A|1313
6R6G|1|K|U|1314
6R6G|1|K|U|1315
6R6G|1|K|C|1316

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain 0
eS31
Chain 9
uS14
Chain RR
40S ribosomal protein S12
Chain SS
eS10

Coloring options:


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