IL_6R6P_082

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6R6P|1|5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_082 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.3338

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6R6P|1|5|G|2001
6R6P|1|5|A|2002
6R6P|1|5|G|2003
6R6P|1|5|U|2004
6R6P|1|5|G|2005
*
6R6P|1|5|C|2014
6R6P|1|5|U|2015
6R6P|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain m

eL40

Chain s

60S acidic ribosomal protein P0

Chain t

Ribosomal protein L12