IL_6R6P_151

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6R6P|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_151 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.2713

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6R6P|1|5|A|4681
6R6P|1|5|U|4682
6R6P|1|5|U|4683
6R6P|1|5|A|4684
6R6P|1|5|U|4685
*
6R6P|1|5|A|4705
6R6P|1|5|G|4706
6R6P|1|5|A|4707
6R6P|1|5|A|4708
6R6P|1|5|U|4709

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40