IL_6R6P_186

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6R6P|1|K|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_186 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1861

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6R6P|1|K|G|145
6R6P|1|K|G|146
6R6P|1|K|A|147
6R6P|1|K|U|148
6R6P|1|K|A|149
6R6P|1|K|A|150
6R6P|1|K|C|151
*
6R6P|1|K|G|167
6R6P|1|K|C|168
6R6P|1|K|U|169
6R6P|1|K|A|170
6R6P|1|K|A|171
6R6P|1|K|U|172
6R6P|1|K|A|173
6R6P|1|K|C|174

Current chains

Chain K

18S rRNA

Nearby chains

Chain NN

eS24

Chain z

40S ribosomal protein S6