IL_6R6P_195

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6R6P|1|K|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_195 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.3697

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6R6P|1|K|G|411
6R6P|1|K|G|412
6R6P|1|K|G|413
*
6R6P|1|K|C|424
6R6P|1|K|G|425
6R6P|1|K|A|426
6R6P|1|K|U|427
6R6P|1|K|U|428
6R6P|1|K|C|429

Current chains

Chain K

18S rRNA

Nearby chains

Chain VV

Ribosomal protein S23

Chain XX

Ribosomal protein S9 (Predicted)

Chain x

40S ribosomal protein S4