IL_6R6P_220

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6R6P|1|K|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_220 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2336

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6R6P|1|K|G|925
6R6P|1|K|A|926
6R6P|1|K|C|927
*
6R6P|1|K|G|1014
6R6P|1|K|U|1015
6R6P|1|K|U|1016
6R6P|1|K|U|1017

Current chains

Chain K

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S27

Chain QQ

ribosomal protein uS15