IL_6R6P_242

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6R6P|1|K|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_242 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.2175

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6R6P|1|K|U|1329
6R6P|1|K|G|1330
6R6P|1|K|C|1331
6R6P|1|K|A|1332
6R6P|1|K|U|1333
*
6R6P|1|K|A|1498
6R6P|1|K|U|1499
6R6P|1|K|G|1500

Current chains

Chain K

18S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 4

mRNA

Chain DD

Ribosomal protein S3

Chain GG

uS10

Chain SS

eS10

Chain w

S29