IL_6R7Q_115

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6R7Q|1|5|A|3785, 6R7Q|1|5|C|3791, 6R7Q|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_115 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0923

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6R7Q|1|5|C|3781
6R7Q|1|5|C|3782
6R7Q|1|5|A|3783
6R7Q|1|5|A|3784
6R7Q|1|5|A|3785
6R7Q|1|5|U|3786
6R7Q|1|5|G|3787
6R7Q|1|5|C|3788
6R7Q|1|5|C|3789
6R7Q|1|5|U|3790
6R7Q|1|5|C|3791
6R7Q|1|5|G|3792
*
6R7Q|1|5|C|3808
6R7Q|1|5|G|3809
6R7Q|1|5|C|3810
6R7Q|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41