IL_6R7Q_172

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6R7Q|1|K|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_172 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.305

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6R7Q|1|K|C|37
6R7Q|1|K|A|38
6R7Q|1|K|A|39
6R7Q|1|K|A|40
*
6R7Q|1|K|U|514
6R7Q|1|K|G|515
6R7Q|1|K|A|516
6R7Q|1|K|C|517
6R7Q|1|K|G|518

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain NN

eS24

Chain x

40S ribosomal protein S4