IL_6R7Q_220

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6R7Q|1|K|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_220 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1504

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6R7Q|1|K|G|952
6R7Q|1|K|C|953
6R7Q|1|K|U|954
6R7Q|1|K|A|955
6R7Q|1|K|G|956
*
6R7Q|1|K|C|967
6R7Q|1|K|U|968
6R7Q|1|K|U|969
6R7Q|1|K|G|970
6R7Q|1|K|G|971
6R7Q|1|K|A|972
6R7Q|1|K|C|973
6R7Q|1|K|C|974

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain MM

uS11

Chain u

40S ribosomal protein S3a