IL_6R7Q_244

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6R7Q|1|K|C|1403, 6R7Q|1|K|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_244 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1361

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6R7Q|1|K|A|1402
6R7Q|1|K|C|1403
6R7Q|1|K|U|1404
6R7Q|1|K|A|1405
*
6R7Q|1|K|U|1441
6R7Q|1|K|U|1442
6R7Q|1|K|C|1443
6R7Q|1|K|U|1444

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 6

ribosomal protein RACK1

Chain GG

uS10

Chain UU

Ribosomal protein S16