IL_6R84_002
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAUC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 6R84|1|1|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R84_002 not in the Motif Atlas
- Geometric match to IL_5MSF_001
- Geometric discrepancy: 0.2057
- The information below is about IL_5MSF_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6R84|1|1|A|12
6R84|1|1|A|13
6R84|1|1|U|14
6R84|1|1|C|15
*
6R84|1|4|G|144
6R84|1|4|U|145
6R84|1|4|U|146
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L8-A
- Chain Z
- 60S ribosomal protein L25
- Chain p
- 60S ribosomal protein L15-A
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