IL_6R84_066

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUU*AGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R84_066 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3233

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6R84|1|1|G|1624
6R84|1|1|A|1625
6R84|1|1|U|1626
6R84|1|1|U|1627
*
6R84|1|1|A|1816
6R84|1|1|G|1817
6R84|1|1|U|1818
6R84|1|1|U|1819

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

60S ribosomal protein L27-A