IL_6R84_088
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6R84|1|1|U|2159, 6R84|1|1|U|2175, 6R84|1|1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R84_088 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1236
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R84|1|1|C|2156
6R84|1|1|G|2157
6R84|1|1|A|2158
6R84|1|1|U|2159
6R84|1|1|G|2160
6R84|1|1|G|2161
*
6R84|1|1|U|2173
6R84|1|1|G|2174
6R84|1|1|U|2175
6R84|1|1|U|2176
6R84|1|1|G|2177
6R84|1|1|A|2178
6R84|1|1|C|2179
6R84|1|1|G|2180
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L43-A
- Chain E
- 60S ribosomal protein L2-A
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