IL_6R84_092

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

6R84|1|1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R84_092 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.3373

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6R84|1|1|G|2206
6R84|1|1|A|2207
6R84|1|1|A|2208
6R84|1|1|U|2209
6R84|1|1|G|2210
*
6R84|1|1|C|2235
6R84|1|1|G|2236
6R84|1|1|C|2237

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

ABC transporter ATP-binding protein ARB1

Chain E

60S ribosomal protein L2-A