IL_6R86_060

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6R86|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_060 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.1327

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6R86|1|1|U|1501
6R86|1|1|C|1502
6R86|1|1|A|1503
6R86|1|1|A|1504
6R86|1|1|C|1505
*
6R86|1|1|G|1513
6R86|1|1|G|1514
6R86|1|1|A|1515

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein L17-A

Chain T

60S ribosomal protein L19-A

Chain n

60S ribosomal protein L39