IL_6R86_066

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6R86|1|1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_066 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.3698

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6R86|1|1|U|1627
6R86|1|1|C|1628
6R86|1|1|U|1629
6R86|1|1|U|1630
6R86|1|1|C|1631
*
6R86|1|1|G|1811
6R86|1|1|G|1812
6R86|1|1|A|1813
6R86|1|1|A|1814
6R86|1|1|U|1815
6R86|1|1|A|1816

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain b

60S ribosomal protein L27-A