IL_6R86_077

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6R86|1|1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_077 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0909

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6R86|1|1|C|1918
6R86|1|1|G|1919
6R86|1|1|U|1920
6R86|1|1|A|1921
6R86|1|1|A|1922
6R86|1|1|C|1923
*
6R86|1|1|G|1928
6R86|1|1|G|1929
6R86|1|1|A|1930
6R86|1|1|U|1931
6R86|1|1|A|1932
6R86|1|1|A|1933
6R86|1|1|G|1934

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain T

60S ribosomal protein L19-A