IL_6R86_096

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGA*UUUA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_096 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.2403

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6R86|1|1|U|2436
6R86|1|1|G|2437
6R86|1|1|A|2438
*
6R86|1|1|U|2508
6R86|1|1|U|2509
6R86|1|1|U|2510
6R86|1|1|A|2511

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L2-A

Chain K

60S ribosomal protein L8-A

Chain p

60S ribosomal protein L15-A