IL_6R86_097

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAGA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_097 not in the Motif Atlas

Geometric match to IL_1L9A_002

Geometric discrepancy: 0.3967

The information below is about IL_1L9A_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6R86|1|1|A|2438
6R86|1|1|A|2439
6R86|1|1|G|2440
6R86|1|1|A|2441
*
6R86|1|1|U|2505
6R86|1|1|U|2506
6R86|1|1|C|2507
6R86|1|1|U|2508

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain k

60S ribosomal protein L36-A