IL_6R87_029

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_029 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.1069

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6R87|1|1|U|834
6R87|1|1|G|835
6R87|1|1|A|836
6R87|1|1|A|837
6R87|1|1|G|838
*
6R87|1|1|U|855
6R87|1|1|G|856
6R87|1|1|G|857
6R87|1|1|A|858
6R87|1|1|G|859

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A

Chain T

60S ribosomal protein L19-A