IL_6R87_035

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

6R87|1|1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_035 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.5068

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6R87|1|1|C|977
6R87|1|1|G|978
6R87|1|1|U|979
6R87|1|1|A|980
6R87|1|1|U|981
*
6R87|1|1|A|1102
6R87|1|1|A|1103
6R87|1|1|G|1104

Current chains

Chain 1

25S rRNA

Nearby chains

Chain J

60S ribosomal protein L7-A

Chain S

60S ribosomal protein L18-A

Chain d

60S ribosomal protein L29