IL_6R87_055

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6R87|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_055 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2341

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6R87|1|1|G|1262
6R87|1|1|A|1263
6R87|1|1|G|1264
6R87|1|1|U|1265
6R87|1|1|G|1266
*
6R87|1|1|C|1275
6R87|1|1|U|1276
6R87|1|1|C|1277

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L12-A