IL_6R87_061

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6R87|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_061 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1834

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6R87|1|1|U|1501
6R87|1|1|C|1502
6R87|1|1|A|1503
6R87|1|1|A|1504
6R87|1|1|C|1505
*
6R87|1|1|G|1513
6R87|1|1|G|1514
6R87|1|1|A|1515

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L17-A

Chain T

60S ribosomal protein L19-A

Chain n

60S ribosomal protein L39