IL_6R87_111
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R87_111 not in the Motif Atlas
- Homologous match to IL_5TBW_106
- Geometric discrepancy: 0.1573
- The information below is about IL_5TBW_106
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6R87|1|1|U|2835
6R87|1|1|C|2836
6R87|1|1|A|2837
6R87|1|1|A|2838
6R87|1|1|G|2839
*
6R87|1|1|C|2849
6R87|1|1|G|2850
6R87|1|1|A|2851
6R87|1|1|C|2852
6R87|1|1|A|2853
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain R
- Protein VMS1,Vms1,Protein VMS1,Vms1
- Chain o
- Ubiquitin-60S ribosomal protein L40
- Chain s
- 60S ribosomal protein L10
Coloring options: