IL_6R87_119

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6R87|1|1|A|3142, 6R87|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_119 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.1404

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6R87|1|1|C|3004
6R87|1|1|A|3005
6R87|1|1|A|3006
6R87|1|1|U|3007
*
6R87|1|1|A|3139
6R87|1|1|G|3140
6R87|1|1|A|3141
6R87|1|1|A|3142
6R87|1|1|C|3143
6R87|1|1|G|3144

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain Q

60S ribosomal protein L16-A