IL_6R87_125
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 6R87|1|1|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R87_125 not in the Motif Atlas
- Homologous match to IL_8C3A_129
- Geometric discrepancy: 0.1198
- The information below is about IL_8C3A_129
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6R87|1|1|A|3103
6R87|1|1|U|3104
6R87|1|1|U|3105
6R87|1|1|A|3106
6R87|1|1|U|3107
*
6R87|1|1|A|3127
6R87|1|1|G|3128
6R87|1|1|A|3129
6R87|1|1|A|3130
6R87|1|1|U|3131
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 7
- 60S ribosomal protein L9-A
- Chain Q
- 60S ribosomal protein L16-A
- Chain o
- Ubiquitin-60S ribosomal protein L40
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