IL_6R87_146
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 6R87|1|3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R87_146 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0943
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6R87|1|3|A|72
6R87|1|3|C|73
6R87|1|3|C|74
6R87|1|3|G|75
6R87|1|3|A|76
6R87|1|3|G|77
6R87|1|3|U|78
6R87|1|3|A|79
6R87|1|3|G|80
*
6R87|1|3|C|100
6R87|1|3|G|101
6R87|1|3|A|102
6R87|1|3|A|103
6R87|1|3|A|104
6R87|1|3|C|105
6R87|1|3|U|106
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L7-A
- Chain U
- 60S ribosomal protein L20-A
- Chain V
- 60S ribosomal protein L21-A
- Chain s
- 60S ribosomal protein L10
Coloring options: